PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g11530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 467aa    MW: 49455.1 Da    PI: 10.0966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g11530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Tp5g11530 61 FVCEICNKGFQRDQNLQLHRRGH 83
               89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PfamPF121717.3E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355270102132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.14E-7132157No hitNo description
SMARTSM00355190137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MPIDLDNSST VSGEASLSST GNQNPLPKSA GKKKRNLPGM PDPDSEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QKSSKEVRKK VYVCPEISCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVVS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ENARSHSHSK KQNPEVLTRK KPVLDPKSLT GANSLASSPN YAVSSAAPVE  240
TQSAKIKSPP AITIKQSESP KTPPEILQEA PKLSGLNVTR NSGFAGLFES SSASSSIFTS  300
SSSSSQSLFA PSSSIEPISL GLSTNHGSSF LCSTRFPTQP AMSATALLQK AAQMGAASSG  360
GSLLRGLGIV SSSSPSMDSI VPHGLALGLP CGGESSSGLK ELMMGNSSVF GPKQTTLDFL  420
GLGRAVGNGG DPGNGLSALI GRSGSIDMAA TFGSGEFSGK DIVRRTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQKSSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599512.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A087GWR50.0A0A087GWR5_ARAAL; Uncharacterized protein
STRINGBra036098.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2